DNA Protein Interactions

In Vitro Screening for Regulated Transcription Factors with Differential Display of DNA-Binding Proteins (DDDP)
Hans Reinke and Ueli Schibler
CSH Protocols; 2008; doi:10.1101/pdb.prot5028 [Abstract] [Full text]

Mapping Protein Distributions on Polytene Chromosomes by Immunostaining
Renato Paro
CSH Protocols; 2008; doi:10.1101/pdb.prot4714 [Abstract] [Full text]

DNA Immunoprecipitation (DIP) for the Determination of DNA-Binding Specificity
Andrea J. Gossett and Jason D. Lieb
CSH Protocols; 2008; doi:10.1101/pdb.prot4972 [Abstract] [Full text]

In Vitro Histone Methyltransferase Assay
Ian M. Fingerman, Hai-Ning Du, and Scott D. Briggs
CSH Protocols; 2008; doi:10.1101/pdb.prot4939 [Abstract] [Full text]

Hydroxyl-Radical Footprinting
Michael Carey and Stephen T. Smale
CSH Protocols; 2007; doi:10.1101/pdb.prot4810 [Abstract] [Full text]

Phosphate Ethylation Interference Assay
Michael Carey and Stephen T. Smale
CSH Protocols; 2007; doi:10.1101/pdb.prot4811 [Abstract] [Full text]

Methylation Interference Assay
Michael Carey and Stephen T. Smale
CSH Protocols; 2007; doi:10.1101/pdb.prot4812 [Abstract] [Full text]

Chromatin Immunoprecipitation (ChIP) on Unfixed Chromatin from Cells and Tissues to Analyze Histone Modifications
Alexandre Wagschal, Katia Delaval, Maëlle Pannetier, Philippe Arnaud, and Robert Feil
CSH Protocols; 2007; doi:10.1101/pdb.prot4767 [Abstract] [Full text]

PCR-Based Analysis of Immunoprecipitated Chromatin
Alexandre Wagschal, Katia Delaval, Maëlle Pannetier, Philippe Arnaud, and Robert Feil
CSH Protocols; 2007; doi:10.1101/pdb.prot4768 [Abstract] [Full text]

Yeast Chromatin Immunoprecipitation (ChIP) Assay
William P. Tansey
CSH Protocols; 2007; doi:10.1101/pdb.prot4642 [Abstract] [Full text]