DNA Modification/Epigenetics

Mapping Protein Distributions on Polytene Chromosomes by Immunostaining
Renato Paro
CSH Protocols; 2008; doi:10.1101/pdb.prot4714 [Abstract] [Full text]

DNA Immunoprecipitation (DIP) for the Determination of DNA-Binding Specificity
Andrea J. Gossett and Jason D. Lieb
CSH Protocols; 2008; doi:10.1101/pdb.prot4972 [Abstract] [Full text]

Methylated CpG Island Amplification and Microarray (MCAM) for High-Throughput Analysis of DNA Methylation
Marcos R. H. Estécio, Pearlly S. Yan, Tim H-M. Huang, and Jean-Pierre J. Issa
CSH Protocols; 2008; doi:10.1101/pdb.prot4974 [Abstract] [Full text]

In Vitro Histone Methyltransferase Assay
Ian M. Fingerman, Hai-Ning Du, and Scott D. Briggs
CSH Protocols; 2008; doi:10.1101/pdb.prot4939 [Abstract] [Full text]

Development of Mammalian Cell Lines with lac Operator-Tagged Chromosomes
Yuri G. Strukov and Andrew S. Belmont
CSH Protocols; 2008; doi:10.1101/pdb.prot4903 [Abstract] [Full text]

Micrococcal Nuclease-Southern Blot Assay: I. MNase and Restriction Digestions
Michael Carey and Stephen T. Smale
CSH Protocols; 2007; doi:10.1101/pdb.prot4890 [Abstract] [Full text]

Micrococcal Nuclease-Southern Blot Assay: II. Capillary Transfer and Hybridization
Michael Carey and Stephen T. Smale
CSH Protocols; 2007; doi:10.1101/pdb.prot4891 [Abstract] [Full text]

Chromatin Immunoprecipitation (ChIP) on Unfixed Chromatin from Cells and Tissues to Analyze Histone Modifications
Alexandre Wagschal, Katia Delaval, Maëlle Pannetier, Philippe Arnaud, and Robert Feil
CSH Protocols; 2007; doi:10.1101/pdb.prot4767 [Abstract] [Full text]

PCR-Based Analysis of Immunoprecipitated Chromatin
Alexandre Wagschal, Katia Delaval, Maëlle Pannetier, Philippe Arnaud, and Robert Feil
CSH Protocols; 2007; doi:10.1101/pdb.prot4768 [Abstract] [Full text]

Yeast Chromatin Immunoprecipitation (ChIP) Assay
William P. Tansey
CSH Protocols; 2007; doi:10.1101/pdb.prot4642 [Abstract] [Full text]