Bioinformatics/Genomics, general

Whole Genome Amplification by T7-Based Linear Amplification of DNA (TLAD): Overview
Chih Long Liu, Bradley E. Bernstein, and Stuart L. Schreiber
CSH Protocols; 2008; doi:10.1101/pdb.top42 [Abstract] [Full text]

Whole Genome Amplification by T7-Based Linear Amplification of DNA (TLAD): I. CIP Treatment of Samples and Tailing Reaction with Terminal Transferase
Chih Long Liu, Bradley E. Bernstein, and Stuart L. Schreiber
CSH Protocols; 2008; doi:10.1101/pdb.prot5002 [Abstract] [Full text]

Whole Genome Amplification by T7-Based Linear Amplification of DNA (TLAD): II. Second-Strand Synthesis and In Vitro Transcription
Chih Long Liu, Bradley E. Bernstein, and Stuart L. Schreiber
CSH Protocols; 2008; doi:10.1101/pdb.prot5003 [Abstract] [Full text]

Whole Genome Amplification by T7-Based Linear Amplification of DNA (TLAD): III. Sample Purification
Chih Long Liu, Bradley E. Bernstein, and Stuart L. Schreiber
CSH Protocols; 2008; doi:10.1101/pdb.prot5004 [Abstract] [Full text]

Maximum Parsimony Method for Phylogenetic Prediction
David W. Mount
CSH Protocols; 2008; doi:10.1101/pdb.top32 [Abstract] [Full text]

Distance Methods for Phylogenetic Prediction
David W. Mount
CSH Protocols; 2008; doi:10.1101/pdb.top33 [Abstract] [Full text]

The Maximum Likelihood Approach for Phylogenetic Prediction
David W. Mount
CSH Protocols; 2008; doi:10.1101/pdb.top34 [Abstract] [Full text]

Choosing a Method for Phylogenetic Prediction
David W. Mount
CSH Protocols; 2008; doi:10.1101/pdb.ip49 [Abstract] [Full text]

Methylated CpG Island Amplification and Microarray (MCAM) for High-Throughput Analysis of DNA Methylation
Marcos R. H. Estécio, Pearlly S. Yan, Tim H-M. Huang, and Jean-Pierre J. Issa
CSH Protocols; 2008; doi:10.1101/pdb.prot4974 [Abstract] [Full text]

Calculation of Spot Reliability Evaluation Scores (SRED) for DNA Microarray Data
Kazuro Shimokawa, Rimantas Kodzius, Yonehiro Matsumura, and Yoshihide Hayashizaki
CSH Protocols; 2008; doi:10.1101/pdb.prot4937 [Abstract] [Full text]