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Alignment of Pairs of Sequences

Protocols 1-10 of 12 total displayed.

Most recent content (1 Jun 2008)
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Using PAM Matrices in Sequence Alignments
David W. Mount
CSH Protocols; 2008; doi:10.1101/pdb.top38 [Abstract] [Full text]

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Using BLOSUM in Sequence Alignments
David W. Mount
CSH Protocols; 2008; doi:10.1101/pdb.top39 [Abstract] [Full text]

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Using Gaps and Gap Penalties to Optimize Pairwise Sequence Alignments
David W. Mount
CSH Protocols; 2008; doi:10.1101/pdb.top40 [Abstract] [Full text]

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A Test of the Markov Model of Evolution in Proteins
David W. Mount
CSH Protocols; 2008; doi:10.1101/pdb.ip58 [Abstract] [Full text]

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Comparison of the PAM and BLOSUM Amino Acid Substitution Matrices
David W. Mount
CSH Protocols; 2008; doi:10.1101/pdb.ip59 [Abstract] [Full text]

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Studies of Varying Alignment Algorithm, Amino Acid Scoring Matrix, and Gap Penalties
David W. Mount
CSH Protocols; 2008; doi:10.1101/pdb.ip60 [Abstract] [Full text]

Past content (since Jul 2007)
Topic Introduction Icon

Dot Matrix Pairwise Sequence Comparison
David W. Mount
CSH Protocols; 2007; doi:10.1101/pdb.top31 [Abstract] [Full text]

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Strategies for Sequence Similarity Database Searches
David W. Mount
CSH Protocols; 2007; doi:10.1101/pdb.top15 [Abstract] [Full text]

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Using a FASTA Sequence Database Similarity Search
David W. Mount
CSH Protocols; 2007; doi:10.1101/pdb.top16 [Abstract] [Full text]

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Using the Basic Local Alignment Search Tool (BLAST)
David W. Mount
CSH Protocols; 2007; doi:10.1101/pdb.top17 [Abstract] [Full text]

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